Posts
2023
2020
- Comparing the pore status of flow cells Sep 10
- Automate everything: following and reading literature May 23
- Removing accidental 2D/1D^2 reads from an alignment Apr 18
- Methplotlib examples Feb 18
- Comparing the end reason of reads in a nanopore experiment Feb 5
- Stacked bar chart of FILTER information from a multi-sample VCF Jan 29
2019
2018
- Nanopore sequencing: percent identity over time Dec 17
- PromethION pore count and loading concentration vs yield Dec 14
- PromethION Read length vs yield Dec 11
- PromethION sequencing in Antwerp in 2018 Dec 7
- Genetic association Nov 15
- Announcing methplotlib: a genome browser for nanopore methylation data Nov 12
- Update on Oxford Nanopore basecall quality scores Aug 30
- Getting the number of characters of Google documents Jul 10
- Getting number of characters from all documents in Google drive folder Jul 7
- PromethION human genome NA19240 May 24
- Insertion-deletion ratio in Oxford Nanopore PromethION data Mar 16
- NanoPlot example gallery update Feb 1
- Identifying an individual with Klinefelter syndrome in transcriptome sequencing Jan 26
- Inferring the sex based on transcriptome sequencing Jan 2
2017
- Inferring the sex based on exome sequencing Dec 14
- Random password generator in Python with custom keyboard shortcut Nov 29
- Resizing and combining multiple svg images Nov 15
- Resizing and combining multiple png images Nov 8
- Altmetric scores for bioRxiv preprints, part 2 Sep 6
- Altmetric scores for bioRxiv preprints, part 1 Aug 28
- Getting Altmetric scores for all bioRxiv preprints Aug 20
- A Twitter bot to find the most interesting bioRxiv preprints Aug 8
- Checking if a device is up using cron, ping and Zapier Aug 5
- Convenient uploading of a project to PyPI using a bash alias Aug 3
- Committing the new version file to GitHub Jul 31
- How to avoid duplicating your package version number using a version.py file Jul 28
- Getting the setup.py long_description in reStructuredText from your Markdown README Jul 27
- NanoFilt using albacore sequencing_summary for quality filtering Jul 15
- Calculated average quality vs. Albacore summary Jul 14
- Median basecall quality score to estimate accuracy Jul 13
- The distribution of basecall quality scores Jul 8
- Averaging basecall quality scores the right way Jun 26
- Per base sequence content and quality (end of reads) Jun 15
- Oxford Nanopore basecall quality scores Jun 12
- Trimming and filtering Oxford Nanopore sequencing reads Jun 5
- Example gallery of NanoPlot Jun 1
- Per base sequence content and quality (new basecaller) May 10
- An orphan bioinformatician May 2
- Adding a progress bar to albacore May 2
- Per base sequence content and quality Apr 24
- Getting the edit distance from a bam alignment: a journey Apr 14
- Nanopore ActivityMaps Mar 15